Does the adonis test really exist?

I’ve recently started a chapter for my PhD which involves a meta-analysis of microbial ecological literature. This has involved looking through the methods, or more specifically the stats sections, of lots of studies to see whether they are suitable for inclusion in my analysis. One idiosyncracy I noted whilst doing this is the number of studies that refer to an “Adonis test”. As far as I am aware, adonis is simply the name of the function that carries out a permutational MANOVA (multivariate analysis of variance) or non-parametric MANOVA as the original author of this statistical test calls it (Anderson, 2001).

A quick google search appears to suggest that one potential difference might be that the statistical test carried out by the adonis() function is capable of handling both categoric and continuous predictors. In contrast, non-parametric MANOVA is only able to handle categoric predictors. This difference sort of makes sense, but I’m still not convinced that we should be using the term “adonis test”.

I was also interested to see how many microbial ecology studies actually refer to this so called “adonis test” to see whether we are to blame for this confusion. I conducted a highly rigorous and robust google scholar search (yep, really!) on the terms “adonis test” and “adonis test” + microb* and limited results from 2001-present.

plot of chunk unnamed-chunk-2

As it turns out, 84% of the studies that mention “adonis test” also feature the word “microb*”, suggesting that we might be to blame! Also, only 11 of these studies used the term “MANOVA”, suggesting that the vast majority did not elaborate on the statistical procedure initiated by the adonis function.

If I’m completely wrong on this and there is such a thing as an adonis test then please do tell me. But it seems to be that we need to be a little more careful when describing the statistical methods we use…


Leave a Reply

Fill in your details below or click an icon to log in: Logo

You are commenting using your account. Log Out /  Change )

Google+ photo

You are commenting using your Google+ account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s